PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_1794 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1794 (545 amino acids)

SeqID: PfGW456L13_1794 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1794
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_1794 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_1794
MATCGEVLVKLLENYGVEQVFGIPGVHTVELYRGLARSSINHVTPRHEQGAGFMADGYAR
TSGKPGVCFIITGPGMTNITTAMGQAYADSIPMLVISSVQSRSQLGGGRGKLHELPNQGA
LCAGVAAFSHTLMSASELPGVLARAFALFQAGRPRPVHIEIPLDVLVEEADDLLASLPVN
IDRAGASPSAVSRMAELLAGAKRPLILAGGGAIDAAVELTELAELLDAPVALTINAKGML
ASGHPLLIGSTQSLVATRALVAEADVVLAIGTELAETDYDVTFAGGFEIPGKLLRVDIDP
DQTVRNYPPHVALVADSRNAAQALLSALSHKSLAERRNDWGQVRAARLREDLAATWDAPT
LAQTRFLETVLQELPDAVFVGDSTQPVYTGNLTFNPERPRRWFNSSTGYGTLGYALPAAI
GAWLGGRIEGGARPPVVCLIGDGGLQFTLPELASAVEARTPVIVLLWNNQGYEEIKKYMV
NRAIEPVGVDIYTPDFIGVAKALGCAAEAVSSVEQLRGALRVATDRQGPTLIEIDQTQWM
QAVSK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory