PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_2244 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2244 (448 amino acids)

SeqID: PfGW456L13_2244 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2244
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598039: probable aldolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_2244 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_2244
MSQPWSPDSWRALPIQQQPQYPDAAHLQQVEQTLASYPPLVFAGEARELRRQFAEVTQGR
AFLLQGGDCAESFAEFSAAKIRDTFKVLLQMAIVMTFAAGCPVVKVGRMAGQFAKPRSAN
DETIDGVTLPAYRGDIVNGIGFDEKSRVPDPERLLQSYHQSTATLNLLRAFAQGGFADLH
QVHKWNLDFIANSALAEKYSHLADRIDETLAFMRACGMDSSPQLRETSFFTAHEALLLNY
EEAFVRRDSLTNDYYDCSAHMLWIGDRTRQLDGAHVEFLRGVNNPIGVKVGPSMNPDDLI
RLIDVLNPQNDPGRLNLIARMGANKVGDHLPQLIRAVQREGKQVLWSSDPMHGNTIKASS
GYKTRDFAQILGEVKQFFQVHEAEGSYAGGIHIEMTGQNVTECIGGARPITEDGLSDRYH
THCDPRMNADQSLELAFLIAETLKQVRR