PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3001 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3001 (326 amino acids)

SeqID: PfGW456L13_3001 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3001
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598765: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3001 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3001
MQLGIIGLGRMGGNIARRLMLNGHTTVVYDRNTAFVEALATEGSTGVTDLPALVAGLARP
RAVWVMLPAGAPTEETIDTLSTLLDAGDTIIDGGNTFYKDDIRRAKTLSEKGLHYIDVGT
SGGVWGLERGYCMMIGGDAETVKRLDPLFATLAPGLGDIPRTKDRKSDDDRAERGYIHAG
PAGSGHFVKMIHNGIEYGMMQAFAEGFDILKTKNSESLPQDQRFDLNVADIAEVWRRGSV
VSSWLLDLTADALASDPKLDGFSGSVADSGEGQWTIEAAMEQAVPVPVLSNSLFSRYRSR
GQGTFGDKILSAQRFGFGGHVETSKK