PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3417 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3417 (411 amino acids)

SeqID: PfGW456L13_3417 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3417
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 113644: Rubredoxin-NAD(+) reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3417 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3417
MTLASVVIVGAGQAGFQVAASLRQEGYDGRITLIGDEPGLPYQRPPLSKAYLLGKIQGTN
LLFRPAEFYATQRIELLHDQATAIDRQNGRVVLASGEAISYDHLVLATGAHNRPLPVPGA
ELPQVFGIKTKADADALAPLAKEARNVVVIGAGFIGLEFAAVAAAQGANVHVLELAERPM
ARAVSREMSELFRQAHEAWGVHFDFRQGLSRIDGDNGKVCAVQTADGRALPADLVVFGIG
VIPNAQLATEAGLAIENGIKVDANLLTSDPRISALGDVASFPCLQNDEQHTRLESVQNAI
DQARAVAARLMGKPAPYGALPWFWTDQGDLKLQIAGLSNGYDSTVVLGSPQDKQLSVLCF
RNDRLVAVESCNRMGDHMAARKILARAPKLSAAEAAADGFDLKAWEAANRD