PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3456 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3456 (1187 amino acids)

SeqID: PfGW456L13_3456 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3456
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3456 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3456
MSASPSLDDKYIQHSGKVLLTGIQALVRLPLMQRQRDLANGLNTAGFISGYRGSPLGGFD
QALWKARDYLKEHHTVFHPGMNEDLAATSIWGTQQVNIFEGATYDGVFGMWYGKGPGVDR
CGDVFRHANAAGTSQFGGVLAIAGDDHGARSSSLPHQTEHIFKAVMMPVLAPSGVQEYLD
YGMHGWAMSRYSGCWVALKAVADTVESAAVVDIDIHRVQPIIPDIPLPEGGLNIRWPDPP
LAQEQRLLEHKLYAALAYARVNRLDRIVMDSPKARIGIITSGKSYLDVCQALKILGIDET
LAQQIGLRVYKVGMVWPLEAEGVRQFAEGLEEIVVVEEKRHMIEYQLKEELYNWREDVRP
RIVGKFDDKGEWSLPHTGWLLPATNDLTPAMIARALAKRILHLHQNGPLQVSLAVLDAQL
ASKGQFSNLMERVPHYCSGCPHNTSTKVPQGSRALAGIGCHYMAAWIYPQTQTFSQMGGE
GVAWIGQAPFTKTRHVFANLGDGTYFHSGILAIRAAIAAKVQITYKILYNDAVAMTGGQP
VDGSLSVAQISRQLAAEGVQRIVVVSDDVEKYQHIRDLADGVPVLRRDKMDEVQEQLRQF
QGVSAIIYDQTCAAEKRRRRKRGKFPDPARRVVINEAVCEGCGDCSSKSNCMSVVAVETE
YGRKREIDQSSCNKDFTCLNGFCPSFVTVEGGTLRKPKALASAKNDVWDLPTPATVALEE
PYSILVTGVGGTGVVTIGALLGMAAFIEGKGTLNLDMAGMAQKGGAVWSHIRIAAHQEQL
FAPRIAEGETALLLGCDLVVSANTETLSKLRHGVTHALINSEETITSAFVRTFAQQAETG
DLLKHPDPTFQTGNMSEQIAEAVGTEHADFIDASKIATALMGDSIATNTFMLGYAYQKGW
LPVGKAALLQAIELNGTAVPFNLSAFDWGRRSAHDLPRVLRKLEAGKVQSPDRLLSQSLE
ETLARRMEFLTAYQNYAYAQRYRYRVEQFIKAETALLGQPGKLSASVARYYFKVLAIKDE
YEVARLFTDGQFLEKIQAGFEGDYRLRFHLAPPLLNDNGSGREPKKRSFGPWMLQGFKLL
ARLKFLRNTWLDPFGRTHERKVERNWLANYEQILDEVLAGLTTQKLGLAQDLVELPESVR
GYGPVKERFLGHAQQRQAQLLEQWRNGNTAQFHDASQSNSKIAVTQL