PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3518 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3518 (591 amino acids)

SeqID: PfGW456L13_3518 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3518
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3518 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_3518
MTQPARRQSFVLSLLLSAMLLSGQALAGVSDQDILQDPKNPEQVVTNGLGVQGQRYSPLD
ILNVDNVKELRPAWAFSFGGEKQRGQQAQPMVKDGVMYMTGSYSRVFAVDARTGKKLWQY
DARLPDDIRPCCDVINRGVALYGDLVIFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSI
SAAPLVINGKLITGVAGGEFGVVGKIEAYDPKNGDLLWTRPTVEGHMGYVYKDGKAVENG
ISGGEAGKTWPGDLWKTGGAAPWLGGYYDPETNLLLFGTGNPAPWNSHLRPGDNLYSSSR
LALNPDDGTIKWHFQSTPHDGWDYDGVNELVSFNYSEGGKEIKAAATADRNGFFYVLDRT
NGKFIRGFPFVDKITWATGLDKNGRPIYNEASRPGAPGSEAKGSSVFVAPAFLGAKNWMP
MAYNKDTGLFYVPSNEWGMDIWNEGIAYKKGAAFLGAGFTIKPLNEDYIGVLRAIDPKTG
KEVWRHKNYAPLWGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVWEFQTGSGVLGSPVTW
EMDGEQYVSVLSGWGGAVPLWGGEVAKRVKDFNQGGMLWTFKLPKDLVAKH