PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4123 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4123 (447 amino acids)

SeqID: PfGW456L13_4123 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4123
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4123 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_4123
MLTCSVHPLPYRANPAEYFAAIRHAPGAVLLDSGRPSADRGRYDLLSAWPLEQLTVSPDE
SGDAFLQRLRNNLTRLGEAILPEDYELPFAGGLIGYLSYDFGRHLERLPSQASDDLHLPD
ARFGLYGWALISDHLSRTSQLVFHPTLPDSERQRLIELFSQPAPEVVTPFKLLTPMTADL
SADEYQQAIERIQQYIQAGDCYQVNFAQRFRAPCLGDPWAAYCALRAACPTPFSGFQNLP
DGDAVLSLSPERFVKVSQGHVETRPIKGTRPRGLTPEQDAANAAELLASPKDRAENLMIV
DLLRNDLGRTCRTGSVRVPELFSLESYPNVHHLVSSVTGELADERDALDLIAGSFPGGSI
TGAPKIRAMQIIDELEPTRRGLYCGSLLYLDVRGEMDSSIAIRSLLVKDGQVCCWGGGGI
VADSQWQAEYQESITKVKVLLDTLQNL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory