PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_5022 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5022 (458 amino acids)

SeqID: PfGW456L13_5022 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5022
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7404369: Fumarate hydratase class II]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_5022 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5022
MSNTRIERDSMGELQVPEDALYGAQTQRAVDNFPISGKPMPVQFIRALILAKAAAARTNV
ELKQIGEAQGKAIVDAAQGLLEGDFMQHFPVDVFQTGSGTSSNMNANEVIATLASRLLGE
AVNPNDHVNCGQSSNDIIPTTIHVSAALALHEQLLPALTHLVQVIERKAEQVHHHVKTGR
THLMDAMPVRMSQVLNGWAQQLKANIGHLQDLQPSLQSLAQGGTAVGTGVNAHPEFAARF
SQQLSKLTRVEFQPGKDLFALIGSQDTAVAVSGQLKATAVSLMKIANDLRWMNSGPLAGL
GEIELQALQPGSSIMPGKVNPVIPEATAMVAAQVIGNDSVITIAGQSGNFELNVMLPIIA
QNLLSSIELLANSSRLLADKAIASFKVNEGRIKEALSRNPILVTALNPIIGYQKAAEIAK
KAYQQGRPVIDVALEHTDLTRSQLEELLNPEKLTAGGV