PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_5091 Triosephosphate isomerase (EC 5.3.1.1) (247 amino acids)

SeqID: PfGW456L13_5091 Triosephosphate isomerase (EC 5.3.1.1)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 6226667: Bifunctional PGK/TIM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_5091 Triosephosphate isomerase (EC 5.3.1.1)
MVAGNWKMHGTRASVAELINGLRDLALPSSVDVAVFPPFLHINQVIEGLEGKSISVGAQN
SAVESGQGALTGEVAPSQLVDAGCSLVLVGHSERRQILGEQDAVLIRKFAAAQACGLTPV
LCIGETLEQREAGKTLEVVSRQLGSIIEELGVGAFAKAVIAYEPVWAIGTGLTATPQQAQ
DVHAAIRAQLAAENSEVAQGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGA
ICRAAGN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory