PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_5114 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5114 (564 amino acids)

SeqID: PfGW456L13_5114 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5114
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [16 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2495662: Glycolate permease glcA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_5114 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_5114
MQTWQQLYTPLGSLGLSALAAVIPIVFFFLALAVFRLKGHVAGSITLALSILVAIFAFQM
PVDMAFAAAGYGFAYGLWPIAWIIVAAVFLYKLTVKSGQFEVIRSSVLSITDDQRLQVLL
IGFCFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIANTAPVAFGALGIPIIVA
GQVTGIDAFKIGAMTGRQLPLLSLFVPFWLVFMMDGLRGVRETWPAALVAGLSFAVTQYF
TSNFIGPELPDITSALASLISLTLFLKVWQPKRAAGQHIVGAVSASVVSASVGGFGQKRT
TVASPYSLGEIFKAWSPFLILTVLVTIWTLKPFKAMFAAGGSMYSFVFNFAIPHLDQMVI
KVAPIVVAPTALPAVFKLDPISATGTAIFFSALISMLVLKINIKTGLTTFKETFYELRWP
ILSIGMVLAFAFVTNYSGMSSTMALVLAGTGAAFPFFSPFLGWLGVFLTGSDTSSNALFS
SLQATTAHQIGVNDTLLVAANTSGGVTGKMISPQSIAVACAATGLVGKESDLFRFTLKHS
LFFATIVGLITLAQAYWFTGMLVH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory