PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_553 L-carnitine dehydratase/bile acid-inducible protein F (406 amino acids)

SeqID: PfGW456L13_553 L-carnitine dehydratase/bile acid-inducible protein F
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_553 L-carnitine dehydratase/bile acid-inducible protein F
MGALSHLRVLDLSRVLAGPWAGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENT
SEAAYYLSANRNKQSVTIDFTRPEGQKLVRELAAKSDILIENFKVGGLAAYGLDYETLKT
INPDLIYCSITGFGQTGPYAKRAGYDFMIQGLGGLMSLTGRPEGEEGAGPVKVGVALTDI
LTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGNAPKRLGNAHP
NIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPRFATNKLRVANRAILIPLI
RQATVFKTTAEWVAQLEQAGVPCGPINDVAQMFADPQVKARGLAIELPHALAGMVPQVAS
PIRLSETPVEYRFAPPLLGEHTLEVLQRVLGLDAGAVSAFKASGVL