PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_904 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_904 (957 amino acids)

SeqID: PfGW456L13_904 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_904
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600406: glycine cleavage system protein P1[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_904 FitnessBrowser__pseudo13_GW456_L13:PfGW456L13_904
MSQLPSLSQLRDPNAFLRRHLGPDAAEQQAMLDSLGLGSRVDLIEQTVPPGIRLNRPLDL
PPALDEEAALAKLRGYAEQNQVWTSLIGMGYHGTLTPAVILRNVLENPGWYTAYTPYQPE
IAQGRLEALLNFQQLTIDLTGLELANASLLDEATAAAEAMALAKRVAKSKSNLFFVDENC
HPQTISVVQTRAEGFGFDLIVDTVDNLKRHQVFGALLQYPDTHGEIHDLRPLIDHLHAQQ
ALACVATDLLSLLLLTPPGELGADVVFGSSQRFGVPMGYGGPHAAFFASRDEYKRAIPGR
IIGVSKDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIASFYAVYHGPEGLKRI
AQRVHRLTCILATGLERNGIVRVNRHFFDTLTLEVGGTQTAIIESARAAQINLRILGRGQ
LGLSLDETCDEGTVAKLFDVFLGADHGLSIDDLDAEVLPGGIPQGLARTSPYLRHPVFSA
HHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPQFANLHPFVPKEQ
AAGYGLMIEELERWLCAITGFDAICMQPNSGAQGEYAGLLAIRKYHESRQQGGRDICLIP
SSAHGTNPASAQMAGMRVVIVECDEAGNVDLDDLKEKAAQAAEKLACLMATYPSTHGVYE
EGISEICEVIHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGM
GPIGVRAHLAPFVANHPVVPIDGPHPQNGAVSAAPWGSASILPISWMYIAMMGPQLADAS
EVAILAANYLARHLSGAFPVLYTGRNERVAHECILDLRPLKALTGITEEDVAKRLMDYGF
HAPTMSFPVPGTLMVEPTESESKAELDRFIGAMLSIRAEINEVQNGNWPAEENPLKGAPH
TLADITGVWERPYSIVQAVTPDAHTKAHKYWPVVNRVDNVYGDRNLFCACVPVDDYR