PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) (613 amino acids)

SeqID: PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9)
MPDYRSKTSTHGRNMAGARALWRATGMKDDDFKKPIIAIANSFTQFVPGHVHLKDLGQLV
AREIERAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS
NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLASHGLDLVDAMVIAADSSASDEKVA
EYERSACPTCGSCSGMFTANSMNCLVEALGLALPGNGSTLATHSDREQLFLQAGRTIVEL
CKRYYGENDQSVLPRNIANFQAFENAMTLDIAMGGSTNTILHLLAAAQEAEIDFDLRDID
RLSRNVPQLCKVAPNIQKYHMEDVHRAGGIFSILGSLARGGLLHTQLPTVHSRSMEEAIA
KWDITQTNDEAVHHFFKAGPAGIPTQTAFSQSTRWETLDDDRENGCIRSVEHAYSQEGGL
AVLYGNIALDGCVVKTAGVDESIHVFEGNAKIFESQDSAVRGILADEVKEGDIVIIRYEG
PKGGPGMQEMLYPTSYLKSKGLGKACALLTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQ
DGDKVLIDIPNRSINLLVSDEELAARRVEQDKKGWKPVEVRPRKVTTALKAYALLATSAD
KGAVRNKAMLDGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory