PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS00190 FitnessBrowser__Cup4G11:RR42_RS00190 (393 amino acids)

SeqID: RR42_RS00190 FitnessBrowser__Cup4G11:RR42_RS00190
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 33112646: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS00190 FitnessBrowser__Cup4G11:RR42_RS00190
MRVRKKNTVVAAALLLASAGLAGMSAPAAAKDVVKIAFVGPLTGGVSSIGLGGRNSADLA
VRLRNADPKSKYTYELVTQDDECRPNVGVQVATKIAADKSIVAGVTHFCSAVAMGTVGVY
NRFGMPAVVWGAVLPDVTYGNNFKEIHRVNGTMINQSEVAAKFMTGLGYKKWAIIHDTTD
YGKGHNKYFSEFLKKDGGTVLGTFGVTADQQDFTTELTKIRELKPDVVYFGGLTPLGVRI
RTQMEKLGIKAQFEGTSGIKSDAYIQGTGKEQAEGSLAFIEGAPWEKLPGGLFFAGKYSQ
QKYSDPPEAYGPFAFAAAKLIMDAVEKVGPDRKKVRDTLNATKDADTIIGKVTFDDHRQN
IVPLVTKYVVEDGKWVIWEDSTYGKGKKKLAGL