PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS00200 FitnessBrowser__Cup4G11:RR42_RS00200 (376 amino acids)

SeqID: RR42_RS00200 FitnessBrowser__Cup4G11:RR42_RS00200
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 115123: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS00200 FitnessBrowser__Cup4G11:RR42_RS00200
MVLALAGIALTVYMWLFLHAESQLSVAILLAVAIVAVIAGRKLGANRALEQAGASRPGLA
RLWAVGGTLALIAAFYDAHFALLMICSVLLYTTACLGLTLQFGFSGVANFAGAAFFGIGS
YATAVMAMHTGIPHLLIIVISGVIAALVGSMLITPVLRTRGHYAALVTIAFGILFKTFIE
VNDVLGGPQGLQVPGMTIFGYALNDGFTVAGVDVSFYVSYALISLGICAGVFATVKALER
SWVGLSMDVVRTDETAAATFGLHIARWKVVAFMLGNFFAGIAGSMYGMITGFVAPNNFTF
SDSLLMLSIVILGGLGNAVGLIPAAIIVLVLPEKLQFIQEYRFLFYAALVIAILLFRPDG
LLPRKTRLFFGRETSR