PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS00590 FitnessBrowser__Cup4G11:RR42_RS00590 (501 amino acids)

SeqID: RR42_RS00590 FitnessBrowser__Cup4G11:RR42_RS00590
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS00590 FitnessBrowser__Cup4G11:RR42_RS00590
MPFSATSVTSLRELSDALAARSVSAEELARDYLARIEQAGALNAFVDVNPELTLAQARAA
DARRARGEAGPLTGVPIAHKDVFVTRGWRATAGSRMLANYESPFDAAVVERLAAAGMVTL
GKTNMDEFAMGSSNENSHFGPVRNPWDASRVPGGSSGGSAAAVAAGLAPAATGTDTGGSI
RQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAHTAEDCAMLLGGMAGFDERDST
SVAPALGGVDEDYTRLLGQARAGASAGKPLSGLRIGLPKEYFGKGLAADVEQAVRAALAE
YEKLGATLVEVSLPKTELSIPVYYVIAPAEASSNLSRFDGVRFGHRAAEYRDLMDMYKKT
RAEGFGPEVKRRIMVGAYVLSHGYYDAYYLQAQKIRRIIADDFQRAFTQCDVIMGPVAPT
VAWKLGEKSADPVQMYLADIFTLSTSLAGLPGMSVPCGLGEGGMPVGLQLIGNYFGEAEL
LQTAHAFQQATDWHLRRPAQA