PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS00775 FitnessBrowser__Cup4G11:RR42_RS00775 (915 amino acids)

SeqID: RR42_RS00775 FitnessBrowser__Cup4G11:RR42_RS00775
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS00775 FitnessBrowser__Cup4G11:RR42_RS00775
MTNDTLPPRPMRLSGLEPFTIDEDTLFVNVGERTNVTGSKAFARMILNGQFDDALVVARQ
QVENGAQIIDINMDEAMLDSKAAMVRFLNLIASEPDIARVPIMLDSSKWEVIEAGLKCVQ
GKPVVNSISLKEGEEQFRHHAELIRRYGAASVVMAFDEQGQADTFARKTEICKRSYDILV
NEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATAWIKQNLPYAKVSGGVSNVSFSF
RGNDAVREAIHTVFLYHAIKAGMDMGIVNAGQLGVYDQLDAELRERVEDVVLNRREDSTD
RLLEIADRYKGGGAKKEENLLWRGTPENPVPVADRLSHALVHGLTTFIVEDTEEVRQQVE
ARGGRTIEVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLLPYIEEEKRLL
AEAGGDVKARGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILARAKVE
GADIVGLSGLITPSLEEMAYVASEMQRDDYFRIKKIPLLIGGATTSRVHTAVKIAPHYEG
PVVYVPDASRSVSVASSLLSDDGAARYLDELKTDYERIRHQHANKKATPMVSLAKARANK
TPVDWSAYVPPKPKFIGRRIFRNYDLTELANYIDWAPFFQTWDLAGKFPDILNDEIVGES
ARRVFSDGKAMLSRLIQGRWLTANGVLALLPANAVNDDDIEIYTDETRSQVALTWHNLRQ
QSERPVIDGVMRPNRCLADFVAPKDSGIADYIGVFAVTAGIGVDKKEAQFEADHDDYSAI
MLKSLADRLAEAFAECLHERVRRDLWGYDAGEVLTNEQLIAETYRGIRPAPGYPACPEHT
VKAPMFEFLNAAEIGMGITDSLAMTPAASVSGFYLAHPESTYFSVGKIGEDQLDDMVARR
GEERSVLERALAPNL