PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS01280 FitnessBrowser__Cup4G11:RR42_RS01280 (559 amino acids)

SeqID: RR42_RS01280 FitnessBrowser__Cup4G11:RR42_RS01280
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS01280 FitnessBrowser__Cup4G11:RR42_RS01280
METTFDYLVVGGGSAGCALAGRLADSGSDSVAVLETGGHDHHVLVSTPAGCAAMLPRAGS
HNYGYRTVPQPGLNGRRGYQPRGRGLGGSSSLNAMIYTRGTPADYDRWASAGCDGWAWDD
VLPYFRRAECNERVAGRDDDPWHGGSGPLHVSDLRTPNPFGQRFIEAAQQAGYRRNDDFN
GVDQEGAGWYQVTQHGGERWNAARAYLHRGDAADHASNGGRENLAVMTGTQVLRIAFEGR
HAVGVVVRLDGRETLLRARREVIVSAGAFGSPQLLMVSGVGPASHLRELGIPVVHDLPGV
GANLQDHLDIIVHKRVAASELFGVSVGGAFRLLAEILRYRRERTGMLTSNFAEAGAFLKS
HAGLDEPDLQLHFVVGMADDHMRRIRLGHGYSCHVCVLRPKSRGEVRLASPDIREAPMID
PCFLSDPRDLDGLVAGVRIVRRILAQPQLAAFGGKELYSAHLPADGGDDSAIRAMIRAHA
DTIYHPVGTCRMGMDEYAVVDPQLRVRGVEGLRVVDASIMPTLIGGNTNAPAIMIGERAH
DLIRHGPRVVLRMAEVLAV