PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS01600 FitnessBrowser__Cup4G11:RR42_RS01600 (1102 amino acids)

SeqID: RR42_RS01600 FitnessBrowser__Cup4G11:RR42_RS01600
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS01600 FitnessBrowser__Cup4G11:RR42_RS01600
MTDLSDVQKGAQPGAQPGAPHQAQGPKGPVNKVRFVTAASLFDGHDASINIMRRILQSSG
CEVIHLGHNRSVEEVVSAALQEDVQGIAISSYQGGHVEYFKYMVDLLRRRGGEHIQLFGG
GGGVIVADEIRELQAYGVARIFSPEDGQRLGLAGMIADMVQRCDIDLARYAPATLDAMKG
GDRRALAQLITALENGKADPALADTLRAEAATVKTPVLGITGTGGAGKSSLTDELIRRIR
LDQRDALSIAVISIDPSRRKSGGALLGDRIRMNAINHPHIFMRSMATREAGSEISRALPD
VLAACKVAGFDLIIVETSGIGQGDAAIVAHVDLSLYVMTPEFGAASQLEKIDMLDFADFV
AINKFDRKGAQDAWRDVAKQVQRNREQWHAKPEEMPVYGTQASRFNDDGVTMLYQGLREA
LCARGMRAPAGVLPQLSGRVSTGQNVIVPPARNRYLAEIADTVRAYHRRVDAQSRLARER
QQLREARRMLLAASGQEDQGEALQALATERDAALGAQERKLLAMWPQMRKAYSGDEYVVK
IRDKEIRTTLTTTTLSGTTVRKVVLPRFEDDGEVLKWLLRENVPGSFPYTAGVFAFKREN
EDPTRMFAGEGDAFRTNRRFKLVSEGMDAKRLSTAFDSVTLYGEDPHTRPDIYGKVGNSG
VSIATLDDMKVLYDGFDLTSPSTSVSMTINGPAPTILAMFMNTAIDQQFDKFRADNDREP
TVDEQGKIRAWVLQNVRGTVQADILKEDQGQNTCIFSTEFSLKVMGDIQAYFVHHQVRNF
YSVSISGYHIAEAGANPISQLAFTLSNGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPE
YSVLGRVARRIWAVTLRDKYGANERSQKLKYHIQTSGRSLHAQEIDFNDIRTTLQALIAI
YDNCNSLHTNAYDEAITTPTGESVRRALAIQLIINREWGVARCENPNQGSFLIDELTDLV
EDAVMQEFERIAERGGVLGAMETGYQRGKIQDESLYYEQRKHDGTLPIIGVNTFRNPDGD
AAPPSLELARSSEEEKQGQLARLADFHARHADAAPAMLQRLRQAVIDNGNVFAVLMDAVR
VCSLGQVTHALFEVGGQYRRNM