PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS02325 FitnessBrowser__Cup4G11:RR42_RS02325 (612 amino acids)

SeqID: RR42_RS02325 FitnessBrowser__Cup4G11:RR42_RS02325
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS02325 FitnessBrowser__Cup4G11:RR42_RS02325
MSNPSTEEFPARAGDDGRYAAPSLSLGMIGNCAISALVDGRGRIVWCCLPRFDGDPVFNA
LLDPGENAGHFAIEIEDFHEAHQWYEPNTAVLRTRLTDQHGNSLEITDFAPRFFRIGRYF
RPTSLIRRIRPVQGAPRVRVTLAPRFDWGRVKPEITRGSSHVRYIGDGSTLRMTTDAPLT
YVLSQTPFLLTRDLNFILGPDETLQGGVEEIARDFEQETTAYWKMWSRRLAVPREWQEAV
IRAAITLKLSLYEETGAIVAAMTTSIPEAPGSGRNWDYRFCWLRDAFFVIRALNSLSEVG
TMEDYLRWLSNVVMQSRNGHIQPLYGIGLELELPESMLDHLSGYRGMGPVRVGNQAQEHF
QHDVYGNVVLGAAQAFHDHRLLHRGGAAEYHVLETVGEQAVRVFGTPDAGMWELRTRARV
HTSSALMSWAACDRLAKIGDALQLPDRAAYWRQHAEGMKVRIVRESWSEERQAFAESFGG
RELDASVLLMAEVGFIEPRDERFMSTLKAMEASLCDGPYMRRYEAPDDFGKPETAFNICT
FWRIDALARVGRREEAREIFEAMLAARNPLGLLSEDTHPVTGEMWGNFPQTYSMVGLING
AMRLSAPWDSVI