PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS02365 FitnessBrowser__Cup4G11:RR42_RS02365 (793 amino acids)

SeqID: RR42_RS02365 FitnessBrowser__Cup4G11:RR42_RS02365
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00192: CYTOCHROME_B_HEME Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.17
    Periplasmic            0.01
    Extracellular          0.01
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS02365 FitnessBrowser__Cup4G11:RR42_RS02365
MNAPDNQHLIGASVKRKEDYRFLTGNGQYTDDIVLPQQSYGYFLRSPHAHARIVSIDKTE
ALASPGVVAIFTGDDVAADKVGGLPCGWLIHSIDGSPMKEPAHPVLAQGKARHVGDQVAL
VIAETLQQAKDAAEKIDVQYDELPAVVNTAHAASATSLVHDDVPENTSYVWGHGDRAATD
AAFAKAAHVTTLEIINNRLIPNAIEPRAVNASYTRQDDSYTVYVSNQNPHVERLLMGAFV
LGLPESRLRIIAPDVGGGFGSKIFLYAEDVALTWASKKIKRPIKWTAERSESFLTDAHGR
DHVTKAELAMDADGKFLAMRVHTTANMGAYLSTFASSVPTILYATLLAGQYATPAIYAEV
RAVFTNTAPVDAYRGAGRPEATYVVERLVEAAAREMKMDPAQIRRKNFIHDFPYATPVGL
TYDTGDYEPCLARAQELADVKGFPARREEAKQRGKLRGLGYSCYIEACGLAPSNIAGALG
ARAGLFEVGEIRVHPTGTVTVFTGSHSHGQGHETTFAQIVADRLGIALDAVEVVHGDTGR
VPFGMGTYGSRSLSVGGSAIMKALDKIEAKAKKIAAHLLEASDADIEFKNGTFSVAGTDR
SKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPTNFTYPSGAYICEVEVDPDTGESKVI
KFTAVDDFGNIINPMIVEGQVHGGIGQGLGQAMLEQCVYDDDSGQLLTGSYMDYAMPRAG
DLPDFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPAFINALVDALSPLGVHDIQMPATPH
RVWQDIRLAQAPN