PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS04395 FitnessBrowser__Cup4G11:RR42_RS04395 (265 amino acids)

SeqID: RR42_RS04395 FitnessBrowser__Cup4G11:RR42_RS04395
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 84028140: Cystine-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS04395 FitnessBrowser__Cup4G11:RR42_RS04395
MRSLRTGCLNALFAVSLLAAGAAAQAADLLDTVKQAGVLKIGLEGTYPPFNYRGSNNQLE
GFDVDVAKGVAAKLGVKPEFVTTEWSGIIAGLQAGKFDVIVNQVAVTPQRKQVLDFSTPY
VYSAAQLIQRKDDNRQFKSLEDLKGKKLGVSLGSNYNELAKSVAGIDVKTYPGAPEYLRD
LAAQRVDAALNDRLMIGYLIKTSNLPLRPGAIVEGGNSEVAIPFRKDNPKFAQAIDRALD
EMRKDGSLGKLSARWFGSDVTKPAR