PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS04560 FitnessBrowser__Cup4G11:RR42_RS04560 (217 amino acids)

SeqID: RR42_RS04560 FitnessBrowser__Cup4G11:RR42_RS04560
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 401471: D-methionine transport system permease protein metI]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS04560 FitnessBrowser__Cup4G11:RR42_RS04560
MWSEMFDLFLTSFNETLLMVSISGVVGALFGVPLGVLLHLTNRGGVLSHPLFNRTIGVVV
NAVRSIPFIILLVVVIPFTRFIVGSSIGTTAAVVPLTIAAIPFIARLVESALREVDKGLV
EAAQSMGASTGQIVMKVLLPEAMPGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG
YQRYITEVMVAVVLILIVFVQAVQSFGDWLVRRISHK