PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS05210 RR42_RS05210 malic enzyme (773 amino acids)

SeqID: RR42_RS05210 RR42_RS05210 malic enzyme
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS05210 RR42_RS05210 malic enzyme
MTSKTGGDAPQHAPNSPEAQLRLAALEYHRSPTKGKIQVNATKALSNQRDLSLAYSPGVA
YACEEIAKDPAMAAEYTSRGNLVAVITNGTAVLGMGDIGPLAGKPVMEGKGCLFKKFAGI
DVFDIELDAHDPDKIVEIVAALEPTIGGVNLEDIKAPECFYIEKKLRERMNIPVFHDDQH
GTAIISGAALLNGLKVVGKDIAKVKLAVSGAGAAAIACLDTMVSLGVTRSNVSVVDSKGV
IYVGRDANMEPNKARYAQDTSNRTLADIVNGADVFLGCSTAGVLTAEMVKTMADKPIILA
LANPEPEIRPEVAKAARPDCIIATGRSDYPNQVNNVLCFPYIFRGALDCGATKITEAMKL
ACVKAIADLAEAELNDAVAAAYGGQELKFGPDYIIPTPFDQRLIEKIAPAVAKAAEESGV
ATRPIKDLEAYRQQLTQYVYHTGLIMKPVFTAAKAAPKRVVYAEGEEERVLRAVQTVVDE
GLARPILIGRPHVIQMRIDKAGLRLKAGADFELINPEDDPRYRAYHEAYHTLRGRDGVTP
DVAKVMLRRSNTLIGTMLMHMGDADAMLCGTVGRFEAHLEHVRDVIGMAPGAKVFAAMNA
LMLEKYTLFITDTFVNDDPTAEELAAITQLAAEEIARFGQHPKVALMSHSMFGSSDRPSA
RKMRAAQEILAREAPHLEVEGEMQGDAALVEDVRRHFLPGTKLAGSANLLVMPTLDAANI
AFNLLKITGGQGVTIGPILLGAAKPVHILNPQATTRRIVNMTAVAVAEANAVR