PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS07270 FitnessBrowser__Cup4G11:RR42_RS07270 (1626 amino acids)

SeqID: RR42_RS07270 FitnessBrowser__Cup4G11:RR42_RS07270
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS07270 FitnessBrowser__Cup4G11:RR42_RS07270
MLAESEARQAQLLADLMQFAQGRLPGDMFVQAEPFLRHYYDLADAEDLLKRNVADLYGAV
MAHWQTAQRFVPGNARLRVYNPNLEQHGWHSDHSVVEIVNDDMPFLVDSVTMEINRLGLA
LHSAIHPVFRVWRNADGTIAKVGLGGEGDTATSEPAGGPRLESFIHFEVDRCGDTATQEA
LRNGIARVLGDVRAAVQDWPAMTAITRATIDMLAQGPDGNQPDTQEACAFLQWMLDEHFT
FLGQRDYELVARDDRFYLRGVPGSGTGILSEILHPPEEDTLTELPAAATSVIEDTSPIFV
TKANSRSTVHRPGYLDYVGIKLKDANGKLFGERRFVGLYTSTTYMMSCEDIPLVRRKFGN
ILTRAGFLTKGHLYKSLVTIIEQYPRDELFQAEEDELFHITLGILRLQEHQRIRLFVRRD
RFDRFVSCLVFVPRDKYNTDLRQRIQKLLMAAFCGNTCEFTPQLSESPLARIQLIVRGEP
GTMPEVNPDELEERIVQAARRWQDDLAAALLDSTGEEQGNRLLRRYGDSFPAGYREDYPA
RIAVRDIELMEAAQATGGIAMNLYRPIEAAPGAFRFKVYRAREPIALSLSLPMLEHLGVR
VDEERPYLIEPNGAAPVWIHDFGLEMADGVAAGIDLGADIARIKALFEDAFARAWNGEIE
NDDFNRLVLRAELAARDVTILRAYARYLRQVGSTFSDAYIERALTGNPAIASRFVELFVA
RFDPATENARAARCERLQQAIGTELDQVPNLDEDRILRLFLGVINATVRTNYFRHGPDGG
PRPYLSFKFNPALVPGLPEPRPMFEIWVYSPRVEGVHLRGGPVARGGLRWSDRREDFRTE
VLGLMKAQMVKNTVIVPVGSKGGFVVKRPPPANDRDAFLQEGIACYQTFLRGLLDVTDNR
VAGTLVPPPEVVREDGDDPYLVVAADKGTASFSDYANAISAEYGFWLSDAFASGGSVGYD
HKKMAITARGAWESVKRHFREMGVDIQSTDFTVAGIGDMSGDVFGNGMLLSPHIKLVAAF
DHRHIFLDPNPDPAASLRERQRMFELPRSSWADYDMSLVSAGGGLFPRTAKTIAITPQVQ
ASLGISASVLSPAELVHAILLAPVDLLYNGGIGTYVKSSRESHLQVGDRANDAVRVNGAE
LRCKVVGEGGNLGFTQLGRIEFALNGGRINTDAIDNSAGVDCSDHEVNIKILLGLVVADG
EMTEKQRNKLLAQMTDEVGLLVLEDNYYQSQALSVAGRNAPALLDAEGRLIRWLERAGRL
KRALEFLPTEDELGERKAAGLGLTSPERAVLLAYSKMWLYDELLTSALPEDPLVAGLLPA
YFPQPLRERHADTMLRHPLRREILATHLTNTLVNRIGATFVHRMQEETDARPADIVRACL
IARDVFGLDPLWLRIDALDNQVDDDVQARMFAAVGRLLDHASLWFLRHPHAGGPTDGDSA
RYAEAAAWLTPQLPALLAGAEATTLMQWRQDLTQSGVDDELALRVAAGEICAAALDIADV
AAATQRSLALVAGVYFALDTEFSFSWLRERALALPADSHWDLLARTTTLEDLGRLKRALT
VSVLAQPQELDTPAQLIEAWRGERQAQIERFSRMLADQRASGAAGLSMLSVAVREIGLLE
SRQGRA