PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS07505 RR42_RS07505 benzoyl-CoA oxygenase (474 amino acids)

SeqID: RR42_RS07505 RR42_RS07505 benzoyl-CoA oxygenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS07505 RR42_RS07505 benzoyl-CoA oxygenase
MRIDYSQKIPNNVNLSDDRALQRALEHWQPAFLDWWRDMGPEGSHQHDVYLRTAVSVDPA
GWAHFDHVKMPDYRWGIFLQPADPARRIHFGEHKGEAAWQEVPGEHRANLRRIIVTQGDT
EPASVEQQRHLGMTCPSLYDLRNLFQVNVEEGRHLWAMVYLLHRHFGRDGREEAEALLGR
RSGDEDNPRILGAFNERTPDWLAFFMFTHFTDRDGKFQLCALAESSFDPLARTTRFMLTE
EAHHMFVGESGISRVIQRTCEVMRERDIQDPADVRAAGVIDLDTIQRYLNFHYSVTIDLF
GADQSSNAATFYSAGLKGRFEEGKRGDDHVLKGEVYRILDVTDGRLGEREVPMLNALNEV
LRDDYVKDTLGGVARWNKVIEKHGIALRMTVPHKAFNRKIGSLANVHVSPAGELLTEAQW
QAGEREWLPTGEDRAFVASLMGRVTEPGKYANWIAPPVVGVNRQPMDFEYVRFN