PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS07685 FitnessBrowser__Cup4G11:RR42_RS07685 (396 amino acids)

SeqID: RR42_RS07685 FitnessBrowser__Cup4G11:RR42_RS07685
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS07685 FitnessBrowser__Cup4G11:RR42_RS07685
MTESAPAHLRRSIEAIEAIAPEFVAIRRQIHAHPELAFEERRTGDLVAELLTAWGYEVHR
GLGTTGVVGRLRKGLGTRTLGIRADMDALPIQEKTGLDYASTLPGKMHACGHDGHTAILL
CAARYLAESVDFNGTLNLIFQPAEENEGGALRMLEDGLFERFPCDEIYALHNAPGLPVGQ
IGLIAGPAMASFDRATVTLTGRSAHGAMPHHGIDVMQGAASMVLGLQSIVSREIDALKSA
VITVGSIQAGATYNVVPESATIKIGVRALDPKVRTYIETRLRDFVAAQAQSFQLQAEVVY
ERKYPVLVNHDRQTERAREVAVRLLGEDNVVSRGPVMGSEDFACMLEHRPGAYIRLGNGL
GQDGGCMVHNPLYDFNDRALPVGAAFWASLTQSYLA