PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS10350 FitnessBrowser__Cup4G11:RR42_RS10350 (1162 amino acids)

SeqID: RR42_RS10350 FitnessBrowser__Cup4G11:RR42_RS10350
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Periplasmic            0.12
    Cytoplasmic            0.04
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS10350 FitnessBrowser__Cup4G11:RR42_RS10350
MDDTYRLEDRYRREAGSVFLTGTQALVRILVEQARADRIAGLKTGGLVSGYRGSPLGGFD
QELWRQRSLLAEYEIRFEPGLNEDLGATMLWGAQQIDAFPGKRVEGVFSMWYGKGPGVDR
TGDVFRNANVLGTSRHGGVLAIAGDDHAAQSSMFPHQTDHVFEGAMMPVLFPASVEEYVE
FGLFGYALSRFSGLWVAFKAITETVESGRSMLIGGAGSARGARFSLPGDIDIPERGFGYD
TGVKWPGQRAELERRLLEERLPAAQAFARANPIDRTIVRPRDARIGIVTVGKAHGDLLAA
LARLGLDEPRLAELGIGLYKIGMTWPIEGEGVRRFASGMRALLVVEEKRSFVERQIQETL
FNVAAPQRPEVFGKRGPNDAPLLPATLEFAPDQLQKALRQFLAYTGVHALPPGNTGSAAA
LPRQPRVIPLSAQLQPDVLTRKPFFCAGCPHNSSTKLPDGSYAAAGIGCHIMALGQGDNT
ATFCQMGGEGVQWVGLSSFSDLPHLFVNLGDGTYQHSGSLAIRQAVAAGTAVTYKILFND
AVAMTGGQPTEGGLTVPRMVAQLIAEGVGKVVLVSDHPQRYWGAKSIPASVEIAHRDALD
DVQRRLRAYRGVSAIVYDQTCAAEKRRRRKRGTLADPVRRVVINPSVCEGCGDCSVQSNC
IAIEPLETPLGRKRAVNQSSCNKDMSCLKGFCPSFVTIEGLQPKRANQRRIQQMEAQWRA
SLPPPAGPAALGALLEHARILVTGVGGTGVVTVGAILAMAAHLEGKGAATLDFTGLAQKN
GAVVSHVQLADRRERIVTARIEACSADVMIGCDAVVAASPDVLARLRKCGTRAVVNSAVA
PTADFVANGDLPISREIHQAAIESVVGAGQAEFFDCTAAAMTLFGDAIATNMMLVGHAYQ
RGWIPLSEMAIARAIELNGAAVELNRRAFLWGRILACEPNALRRTSAAEAQAAQPFELAR
FVAERKRDLSAYQNAAYAERYGRMVAAVAGAEQRIAGEAGLLAEAVARSYYRVLAYKDEY
EVARLHSDPAFARSLESTFDGHGKKTFHMAPPWLTRVDRNTGRRNKIVLSGTVMSPLLRL
LRHGKILRGTPFDPFGRQSDRRIERRMIVECEDDVQLVLRTLSERTLASAAALVGAYAQI
RGFGVIKERNYRSAQADLQKYR