PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS11980 FitnessBrowser__Cup4G11:RR42_RS11980 (305 amino acids)

SeqID: RR42_RS11980 FitnessBrowser__Cup4G11:RR42_RS11980
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183271: Inner membrane ABC transporter permease protein yddQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS11980 FitnessBrowser__Cup4G11:RR42_RS11980
MTQLSTPANGESAVPATAATQEAVRTPWTEFWRKFRKQHLALGAGVFVLLLVAVAVLAPH
LVPYDPENFFDYDALNAGPSAAHWFGVDSLGRDIFSRILAGARISLAAGFFSVIIGAIVG
TVLGLLAGYYEGWWDRIVMRISDVLFAFPGILLAIGIVAILGNGMTNVIFAVAVFSIPAF
ARLVRGNTLMLKRLTYVEAARSIGASDFTILMRHILPGTISSIVVYFSMRIGTSIITAAS
LSFLGLGAQPPTPEWGAMLNEARADMVTAPHVAIFPSLAIFLTVLAFNLLGDGLRDALDP
KIDRR