PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS12535 FitnessBrowser__Cup4G11:RR42_RS12535 (482 amino acids)

SeqID: RR42_RS12535 FitnessBrowser__Cup4G11:RR42_RS12535
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598930: threonine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS12535 FitnessBrowser__Cup4G11:RR42_RS12535
MKYQSTRGHEMPQTFSEILLGGLAPDGGLYLPREYPQVTADELEAWRKLSYADLAFEVLS
RFCDDIPAEDLRALTRKTYTAEVYCNARPGDNTADITPLRTLGEEGGTQLQLLGLSNGPT
LAFKDMAMQLLGNLFEYALARAGQELNILGATSGDTGSAAEYAMRGKRGIRVFMLSPHRK
MSAFQTAQMFSLQDPNIFNLAVEGVFDDCQDIVKAVSNDLGYKARQKIGTVNSINWARVV
AQVVYYFKGWLLATDGPGQKVSFCVPSGNFGNVCAGHIARMMGLPIDKLVVATNENDVLD
EFFRTGTYRVRKSAETYHTSSPSMDISKASNFERFVFDLLGRDGDKLAKMFREDVDTKGG
FDLSGTPEFERIRAFGFVSGRSTHEDRLATIRDLSERYGITIDTHTADGIKVAREHLTPG
VPMLVLETALPAKFADTIRAALGHEPERPAAFEGIENLPQRFEVMPADADRIKAYIAGHT
GL