PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS12540 FitnessBrowser__Cup4G11:RR42_RS12540 (436 amino acids)

SeqID: RR42_RS12540 FitnessBrowser__Cup4G11:RR42_RS12540
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598931: homoserine dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS12540 FitnessBrowser__Cup4G11:RR42_RS12540
MNPIKVGLLGIGTVGSGTFNVLQRNQEEIRRRAGRGIEIAMVADLNTERARELTGGQVEV
VADANEVVTRPEIDIVIELIGGYGIARELVLKAIENGKHVVTANKALLAVHGNEIFEAAR
KKGVIVAFEAAVAGGIPIIKALREGLTANRIEWIAGIINGTTNFILSEMRDKGLDFGTVL
KQAQALGYAEADPTFDIEGIDAAHKITLMSSIAFGMPVQFDKAYVEGITKLSAVDIRYAE
ELGYRIKLLGLTRRRENGIELRVHPTLVPAKRLIANVEGAMNAVLVQGDAVGATLYYGKG
AGAEPTASAVIADLVDVTRLHTADPEHRVPHLAFQPDELSSVPVLPIEEVTSSYYLRMRV
ADEAGVLADITRILADAGISIDAMLQKESREGEPQTDIIMLSHLTLEKQVNAAIAKIEAL
PTVLSAVTRLRMEELN