PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13510 FitnessBrowser__Cup4G11:RR42_RS13510 (1082 amino acids)

SeqID: RR42_RS13510 FitnessBrowser__Cup4G11:RR42_RS13510
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13510 FitnessBrowser__Cup4G11:RR42_RS13510
MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGFKVVLVNSNPATIMTDPNT
ADVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLAKYNVELIGASP
EAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSMEEALAVQTQIAKETATGGYPIVIRPSFT
LGGSGGGIAYNREEFEEICKRGLDLSPTRELLIEESLLGWKEYEMEVVRDKKDNCIIICS
IENLDPMGIHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPADG
RMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGATPASFEPSID
YVVTKVPRFAFEKFPQADSHLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLDDKS
TDRDEIVEEIGEAGPDRIWYVGDAFRIGMSLEEVHAETAIDPWFLAQIEDIVKTETLVKA
RKLDSLSAAELRHLKQKGFSDRRLAKLMGAEPAAVRVARHAAGVRPVYKRVDTCAAEFAT
NTAYMYGTYEAEHGECEADPTANRKIMVLGGGPNRIGQGIEFDYCCVHAALALREDGYET
IMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDREKPVGVIVQYGGQTPLKLALDLEA
NGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALRLATEIGYPLVVRP
SYVLGGRAMEIVHEPRDLERYMREAVKVSHDSPVLLDRFLNDAIECDVDALCDGQRVFIG
GVMEHIEQAGVHSGDSACSLPPYSLAQATVDELKRQTAAMAKALNVIGLMNVQFAIQQVN
GEDIVYVLEVNPRASRTVPYVSKATGLSLAKIAARCMAGQTLDSQGVFDEVVPPYFSVKE
AVFPFNKFPGVDPVLGPEMRSTGEVMGVGKTFGEALFKSQLAAGSRLPEKGTVLLTVKDS
DKPHAVGVARMLHDMGYPIVATRGTASAIEAAGIPVRVVNKVKDGRPHIVDMLKNGELAL
VFTTVDETRTAIADSRSIRISALASRVPYYTTIAGARAAVEGLKHMQSLEVYDLQSLHAS
LA