PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13535 FitnessBrowser__Cup4G11:RR42_RS13535 (557 amino acids)

SeqID: RR42_RS13535 FitnessBrowser__Cup4G11:RR42_RS13535
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13535 FitnessBrowser__Cup4G11:RR42_RS13535
MASTAHLDTYALDRLPPPQQWPAFLFNADTRYPERMNCALELVERHVREGRGERVAIRYE
QDGAHRTVSYAELAALSNRIAHVLTGDMKLVPGSRVLLRGPNNLMMAACWLAVVKAGLIA
VPTMPLLRAKELKQVIDRAAVSAALCDERLREELEANLKPGGEHHCPSLTQALYFNSSGA
GSVEAAMANKPDGFEACDTAADDICLIAFTSGTTGQPKGTVHFHRDVIAMCDLFPRHVLK
PGPDDIFCGTPPLAFTFGLGGILCFPLRVGASTVLAERLTPESLLALIQSWRATIVFTAP
TFYRQMAALAPGYDLSSLQKSVSAGEALPDATRQSWKAATGIEMTDGIGGTEMMHIFISS
AGADVRPGAIGKVVPGYIAQIVDEQMQPVPHGTVGKLAVRGPTGCRYLDDPRQANYVKDG
WNLPGDTFKADADGYYYYQARSDDMIVSAGYNIAGPEVESALMRHEAVAECGVVGMPDPE
RGQIVAAYVVLRPGVAASDETCAALQSYVKAEIAPYKYPRKVIFVDALPRTETGKLQRFR
LRQMAEQSGAPEGARQP