PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13630 FitnessBrowser__Cup4G11:RR42_RS13630 (764 amino acids)

SeqID: RR42_RS13630 FitnessBrowser__Cup4G11:RR42_RS13630
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13630 FitnessBrowser__Cup4G11:RR42_RS13630
MSTSTVGSATPQVTAREKVMGRAVYAGDIKQAGMLHAKVLRSPYPHARIVRIDTAAARAL
RGVKLVLTGEDTPSRLWGTHRKEQRILAAGVVRHVGEEVAAVVAVDEETARDALDLIRVE
YEELPAIFSPDAALADGAAELHPGTRNIAHEMHIERGDVEAGFARAAVVYEATYDMHSQY
PGYLEPMATVAAQDGNGRLTVWASTQSVFLARARLAEALDRPVSTIRVIQAVTGGGFGAK
IVEESNSLIAALLATRLDRPVRLVNNRLEDFLGARSSVPARVWLKMGLDAQGMIVAKDVN
IVAECGAYAGLAGDVMHVTAMRSDNMHRVENVRSNAVLAYTNNPPRGAFRGFGGQQMQFP
LNSHLTMLAEMLGMDPIEVHKRNAIRSGDTSVHGWKIGSSGLVECLEQTREAIQWDARRA
DASRRTGTRRRGLGIAAAMHVSGNRTLGNWDGSTIVLKVNEDGRVMLLTSECDMGQGANT
MLSQICAQELGIALSHVTVSAPDTDVAPFCLGSLASRVTIISGNAVMRAAREAKQKLLAV
AAGKLGVPQDELDLIDGVIRARHDDTTRATLAEIARLHIFRHGGEGLMVRATYDAPTVMH
DANYYGNIAPAYSFAAQAVEVEVDTVTGQITLIDSFVSDDCGKAINPLAVHGQTHGATVQ
AIGWTLYEHVQVEDGRILNGNFADYTMPTADAVPALRTDVVESVEPNGPYGAKGASETAI
LPGAAAIANAVYDAIGVRIASLPITPEKVLAALRERKENEARHA