PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13810 FitnessBrowser__Cup4G11:RR42_RS13810 (520 amino acids)

SeqID: RR42_RS13810 FitnessBrowser__Cup4G11:RR42_RS13810
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13810 FitnessBrowser__Cup4G11:RR42_RS13810
MKQTQPSGLPQFVLALDQGTSSSRAILFDHAGNVARVAQREFRQYYPHPGHVEHDPYEIW
QSQLAVAHEVLNDAGVAASQVSAIGITNQRETTVLWDRQTGEPIGRALVWQDRRTAPMCE
ALQADGHGELFRDKTGLIIDAYFSGTKLRWMLDNTEGARERAARGELAFGTVDSWLIWQL
TDGKRHVTDVSNASRTMLFNIHAFQWDDDLLDLLDIPRSLLPEVVPSSGEVARTALRLFG
AEIPIAGIAGDQQAATYGQACLSPGMAKNTYGTGCFLLMNTGSQPVTSHNRLLTTIGWQL
GGTTPPASRTQYCLEGGVFMGGATIQWLRDGLQIINSAPEVEPLARQCDDTEGVVLVPAF
AGLGAPHWDPFARGTLVGLTRGTGRAHIARAALESIALQSVDVLDAMQKDAGISLAELRV
DGGASRSDLLMQMQADLLGTAVVRPRVTETTALGAAYLAGLATGYWSGEDEIASQWQMEH
RFEPNLSADARAYRLWRWHRAVERARDWAREDGAPPHSAN