PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13815 FitnessBrowser__Cup4G11:RR42_RS13815 (534 amino acids)

SeqID: RR42_RS13815 FitnessBrowser__Cup4G11:RR42_RS13815
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121408: Aerobic glycerol-3-phosphate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13815 FitnessBrowser__Cup4G11:RR42_RS13815
MQTLHTPILPPERATLLATLEREPKWDVIVIGGGATGLGTAVDAASRGYRTLLVEAADFA
KGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLARNAPHLVWPLGFVVPAYQLFDQP
FYGIGLKLYDMLAGGLNLSGSRWLNHRETLAAAPTLAEHVGGRPLRGGNLYFDGQFDDAR
LAIALMRTLFDVGGTAINYLRVSGLSQRNGVIDGVTVQDVLGDASFDLKASCVINATGVW
VDAVRQMEDGQARSMVAPSQGVHLTLPRSFLPGDRAILIPKTDDGRVLFVVPWNGHTIIG
TTDTPRKDLPLEPRAGADDVDFILETATRYLSRAPTRADVTSVWAGLRPLVKATGEASTA
SLSREHTILVSKAGLITVTGGKWTTYRKMAEDVVGTAIQRQMLPAAPCVTADLPLHGAQG
LPANLPAPGSGSPDRYYGNEAGMLHTLPGNDEMLVPGAGLTAAHVRFAARFELARRVEDV
LARRNRALFLEASAASAAAPRVAEILAEEHGHDAAWQAAEVASFRELASGYMLA