PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS16920 FitnessBrowser__Cup4G11:RR42_RS16920 (526 amino acids)

SeqID: RR42_RS16920 FitnessBrowser__Cup4G11:RR42_RS16920
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.80
    Cytoplasmic            0.19
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            9.80

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS16920 FitnessBrowser__Cup4G11:RR42_RS16920
MSATQANQTSRPLLTLQPGSVTLADLRRIHRGEVSLAMDASAWAGVRASQATVQDIIDAD
AVVYGINTGFGKLAQTRIPHDKLAELQRNLVLSHSVGTGADLHSDTVRLILAIKAVSLAR
GHSGIRPEIIEALLALTNAGVTPCIPAKGSVGASGDLAPLAHMSCTLIGVGEVMIDGVRR
PAAEGLAHAGLAPFTLGPKEGLALLNGTQVSTALALAGLFAAEDIFAAGLVAGALSLEAI
KGSVKPFDARIHAARGQAGQIAVAGAVRALLDGSKIVDSHVSCGRVQDPYSIRCQPQVMG
ACLDNLQHAARVLQIEANAASDNPLVFPEQGDVISGGNFHAEPVAFAADIIALAIAEIGA
ISERRLALLLDSGLSGLPPFLVRDGGLHSGFMIAQVTAAALASENKSLAHPASVDSLPTS
ANQEDHVSMATYGARRLGDMAENTAVVVGIEAMAAAQGIEFHRPLESSPLIESEIARIRE
RVAFVEGDRYFAPDIEAMKQWVQQGDAGAGWPEAVRQVLPSQVGVA