PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS17265 FitnessBrowser__Cup4G11:RR42_RS17265 (587 amino acids)

SeqID: RR42_RS17265 FitnessBrowser__Cup4G11:RR42_RS17265
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS17265 FitnessBrowser__Cup4G11:RR42_RS17265
MLPDASALGTLDALLADGWGQGWHATLFAPYEFGGPLVGAAVHVDCALPLHDGALRLLWF
RQMHRLDKAQVAQWLARSPDQPAGLMDVLADTPEPAFHAAIARIHQWIEAGDTYQVNFTQ
RLRFAEFGDPLALYAALRAAQPVPYGALARLPGDGWVLSLSPELFVRHDGQGQLLTRPMK
GTAPRTGDDARDAEAALALAADAKNRAENVMIVDLLRNDLGRIAVPGTVAVPDRFVVQPF
GQVLQMTSTVTAKARAGTSLADLMRALFPCGSITGAPKRRTMEIIGELERAPRGLYTGSL
GWIDAPGEGQAQAWPGAFALSVAIRTLVLGAQGADGLRAGEMGVGGGIVHDSDAAGEFAE
CGWKARFLTAHDPGFTLFETMRVEDGECQRLDQHLARLAASAACFGFGFERARALALVQA
AVVELGAGTWRLRLALDKAGSFTVAHGPLAPLAAVPVRVVLAAQALPVAHALRRHKTSAR
AVYDAGWQAAERAGAFDSLFFNTRGELLEGGRSSVFVKAEGEWLTPPLAADILPGVMRAA
VLGDGARYLGATVREAVVTQAMLLSAEALALANSLRGVLLAELPATA