PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS18150 FitnessBrowser__Cup4G11:RR42_RS18150 (560 amino acids)

SeqID: RR42_RS18150 FitnessBrowser__Cup4G11:RR42_RS18150
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS18150 FitnessBrowser__Cup4G11:RR42_RS18150
MERLWLKHYPAGVPAEIDSSQFHSLAELLEASFRTYADRRAFVCMDKSITYGELDRMSRQ
FAAWLQSRGLKPGARVAIMMPNVLQYPVVLAAVLRAGFVVVNVNPLYTPRELEHQLKDSG
AEAIVILENFATTLQQVLPATPVKHVVVASMGDLLGGLKGAIVNFVVRNVKKMVPAWELP
NCVRFNAVLAEGRGMQLQPATTGPDDVAFLQYTGGTTGVSKGAVLLHRNIVSNVLQSEAW
MQPALAKGAPIDQVITITALPLYHIFALTVCCLLGMRSGGLSVLIPNPRDIPGFIKELQK
YKFNMFPAVNTLYNALINSPDIDKVDFSGLRVANGGGMAVQEAVAKKWLARTGCPIIEGY
GLSETSPSATCNPTDSDAFSGTIGLPLPSTDIAIRDDDGADVPLGQAGEICIRGPQVMAG
YWNRPDETAKVMTADGFFKSGDIGVMDARGYTKIVDRKKDMILVSGFNVYPNEVEGVAAE
CPGVLEVAAVGVPDEHSGEVVKLYVVRKDPALTEAELIAFCKERLTGYKRPKFVEFRSEL
PKTNVGKILRRELRDSRKAA