PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS20070 FitnessBrowser__Cup4G11:RR42_RS20070 (973 amino acids)

SeqID: RR42_RS20070 FitnessBrowser__Cup4G11:RR42_RS20070
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS20070 FitnessBrowser__Cup4G11:RR42_RS20070
MNAPLPMTAAQVARPTLAELEARDAFASRHIGPDAAEQQHMLKVLGYDNRAALIDAVIPA
AIRRRDGMPLGEFTAPLTEEAALAKLRGLASKNRVLKSFIGQGYYNTLTPGVVLRNIFEN
PAWYTAYTPYQPEISQGRLEAMLNFQQMVTDLTGLDIANASMLDEGTAAAEAMTLLQRVN
KHASTTFYVADDVLPQTLEVVRTRALPLGIEVKVGPAAEAAGAHAFGVLLQYPGVNGDVA
DYRAIADAVHAAGGLVVAAADLLALTLIAAPGEWGADVAVGNSQRFGVPLGFGGPHAGYM
AVKDAFKRSMPGRLVGVTIDAQGNKAYRLALQTREQHIRREKATSNICTAQVLLAVMASM
YAVYHGPQGLKRIAQRVHRLTATLAGGLEQLGYARTNATFFDTLTLETGFNTEALHASAT
ARGINLRHAGATRIGISLDETASREDVVALLEIFAHGKPVPGFDALEAAAQDAFPAGLAR
QSAYLTHPVFNTHHAEHEMLRYLRMLADKDLALDRTMIPLGSCTMKLNATSEMIPVTWPE
FSKIHPFAPLDQTVGYREMIDQLEAMLCAATGYAAVSLQPNAGSQGEYAGLLIIHAYHAS
RGESHRDICLIPSSAHGTNPASAQMAGMKVVVVACDENGNVDLEDLAKKAEQHSKNLAAI
MITYPSTHGVFEQGVQQICHIVHKHGGQVYVDGANMNAMVGTAAPGQFGGDVSHLNLHKT
FCIPHGGGGPGVGPVAVGAHLADFLPNQDSVGYRRDDQGIGGVSAAPFGSASILPISWMY
IAMMGSAGLTAATENAILAANYVARRLSPHFPVLYTGQHGLVAHECILDVRALQKTTGIS
NEDVAKRLMDYGFHAPTMSFPVPGTLMIEPTESEALHELDRFIDAMIAIRAEIARVEDGT
FDREDNPLKNAPHTAAVITADVWEHKYTRQEAAYPVAALRTQKYWPPVGRADNVYGDRNL
FCACVPMSEYTEE