PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21365 FitnessBrowser__Cup4G11:RR42_RS21365 (545 amino acids)

SeqID: RR42_RS21365 FitnessBrowser__Cup4G11:RR42_RS21365
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21365 FitnessBrowser__Cup4G11:RR42_RS21365
MQAQDKLPLLSVRELTIALPAGGDRAHAVKEVSYDLHAGEILCIVGESGSGKSMSANAIM
GLLPPYLKPQGGQILFQGKDLLTQDEQTLLSMRGKAMAMVFQEPLSALNPVMTVGDQIAE
VMRVHDAYPGEARTKRVLELLEFVGLPDPATLIHSYPFRLSGGQRQRVVIAMALALEPAL
LIADEPTTALDVTTQAQILALIRRIQADKGMGVMFVTHDFGVVAEIADRVAVMERGVLVE
VGPVQQVLNHPQHPYTRRLIGAVPHGRAKARDQQAAETVLEVRDLRKTYSSGGGLFSKKR
VVNAVDGVSFSVRRGQTLGIVGESGSGKSTIGKCLLKLTDIDGGELLFDGQDIARLTERQ
FRPLRSDVQMIFQDPFASLNPRHTVGRIITDGPIANGAALAQAQARGRELLQLVGLEPSA
FDRYPNQFSGGQRQRIGIARALALDPKLLVADESVSALDVSVQAQVLQLLADLQKRLNIG
LIFITHDLRVAAQICHHVIVMHKGRVVESGPPDQIFDAPQHAYTQRLIAAIPGKEWDPTL
IRAAA