PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21485 FitnessBrowser__Cup4G11:RR42_RS21485 (454 amino acids)

SeqID: RR42_RS21485 FitnessBrowser__Cup4G11:RR42_RS21485
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21485 FitnessBrowser__Cup4G11:RR42_RS21485
LPEITACDALDVDIAVAKAKAAFEDGRWHRRSPAQCKATLLRFADLLEQHAHELAVMESL
DSGKPIRECQATDVPETIHTIRWHAELIDKIYDSTAPVGSNALSLVVREPIGVVGLVLPW
NFPLLMLAWKIGPSLAAGCSIIVKPAKETTLTALRVAELAHEAGVPAGVFNVLPGGGKDV
GEPLGKHMDVSMVSFTGSTDTGRLFLRYAADSNLKRIVLECGGKNPAVVMNDVEDIDVVA
QHVVNGAFWNMGENCSASSRLIVHAEVKDNLLAHIGVHLREWKMGDPLDPEHRIGSLVSE
SHFRKGQSYIELANAENLRVAFGGGTEGETFVEPTVVDGVGQHSRLFKEEIFGPILSVTT
FTSTEEAIALANDSVYGLAASVYTSNLNNAIRLSREIRAGVVTVNCFGEGDVTTPFGGYK
ESGFGGRDKSIWAHDQYTEIKTIWIDVPDRAAVK