PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21730 FitnessBrowser__Cup4G11:RR42_RS21730 (338 amino acids)

SeqID: RR42_RS21730 FitnessBrowser__Cup4G11:RR42_RS21730
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599346: acetoin catabolism protein AcoB[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21730 FitnessBrowser__Cup4G11:RR42_RS21730
MSRKLSMKLAINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHG
DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAE
TPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIF
CEHKNLYGFEGEVPENSYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEA
EIVDLRTLSPLDIDTVLESVEHTGRLVVVDEASPRCNIATDISAQVAQRAFGALKAGIEM
VCPPHTPVPFSPALEDLYIPSAAHIADAARKTVKGGKH