PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24125 FitnessBrowser__Cup4G11:RR42_RS24125 (1152 amino acids)

SeqID: RR42_RS24125 FitnessBrowser__Cup4G11:RR42_RS24125
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24125 FitnessBrowser__Cup4G11:RR42_RS24125
MARSLDARYEADTPLAFLNGNQALIRMIVEQMRSDGETGLRTKAFVTGYPGSPLGSIDIA
LRQAKRTLDAHGITHRAAQNEEFAVSMLSGTQMLDEHPHPDVDGVVGYWYGKGPGLDRSG
DALKHANFAGTSRHGAVVILSGEDHEAKSSTVPYQQEFSFEHHGIPVLYPASVQEFLDYG
LHAAALSRFSGCWVALKLVGTLCDGGEVVQLHPAGIRTQIPELQIGGKPFTRMANHRFFP
VTNVETERRLYDERHAAVLAYARANGLNRIVRSAPGDRIGIISAGKSWADTQQALEDLGF
DGPALQAQGIRLAKVGLLCPADGAFFREFAEGLQTIVVIEEKRDFLERQVAAGAVGATVR
EILGKHDEHGQRLFPVEGGMTADMVAERLARILARSTPLPERGRERIQYLEGNSVKRDAA
LPGRAPNYCSGCPHNVSTLLAPGQMAWGAPGCHLFAALMDKPQKRVEATTQLGGEGLPWL
GLAPYTSRPHIVQNVGDGALFHSSYQNIRFAITTGANMTFKLLINGVLANTGGQEAVGAS
AIADLAGRLLQDGASRVVLVTKEPDQYARVQLPASLVRRSPDQLEQTMKELAAIKGVTIL
IYDGACANERRRRQKRGLLPAPTVFTVVNEEVCENCGDCGAKANCMSLQKVPTEFGPKTQ
IHQSTCNQDQACIQGECPSFVTVEVESGKGVRKPSLPAIDAASIPEIEPGSLQAPYHIYI
PGLGGSGVLTASAILAQAACMQGLQVKTYDQTGAAQKWGAVLSSLILAPADRPPHTNKVG
IGKADLYLALDLLAAVETNNLKCCDANHTRVVVNAGVFPNGDVIRDSRKTLPTLELCETV
AAAGRKESVLTLDARRIAEALFGDFMMTNMVAIGAAYQAGWLPIRAECIEAAIGLNGAQV
EANTMAFRAGRLWVHAPERVEVMGSLKLHPLADRTERLRALRSEGKLKALARFESHLAKL
SPQLRERVQLRFADLIDYQNTAYAARYLGRVTASLQAEAAARGEGHGYEVTAAIAESLHK
LMAYKDEYEVARLLTLSGFEKRVADMFSGSVRLKYNLQPPLARTLGLKGKLRVGGWIRPA
LKTLAALKFLRGTALDPFYALASRKEERALLAWYEGVLGEGLKLLDAHNSAQVVELLRLP
TTIRGYETVKSA