PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24170 FitnessBrowser__Cup4G11:RR42_RS24170 (285 amino acids)

SeqID: RR42_RS24170 FitnessBrowser__Cup4G11:RR42_RS24170
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595515: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24170 FitnessBrowser__Cup4G11:RR42_RS24170
MKLCIFDDDRIGVALGQDVVDITDVFASSFRPTWPYPKYDWIINNFESVRPHIDEAIESG
RRVPLASVRLRAPVANPGKIIAAPINYKDHIAEANNDPQINHGKTFTDLSTLGVFLKANS
SVIGCHEDIRIPFPDRRTDHEVELAVVIGREAKKVSRENALAFVFGYCIGLDMTVRGPEL
PDFRKSADTFSVLGPWIVTADEIPEPNSLDLSIHVNGELRQQSNTKYLIYDVQRLIEYAS
AMYTLYPGDVIMTGTPAGVSPVTYGDILEASVSGIGTMTARVAAN