PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24450 FitnessBrowser__Cup4G11:RR42_RS24450 (310 amino acids)

SeqID: RR42_RS24450 FitnessBrowser__Cup4G11:RR42_RS24450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600580: CdhC, Carnitine dehydrogenase-related gene C[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24450 FitnessBrowser__Cup4G11:RR42_RS24450
MYQQSKVIISCAVTGAIHTPSMSPHLPITPEEIAESSIAAAEAGAAIIHLHARDPVTGRP
DQRPEAFLPFVREIKARCDVVLNLTTGGSPYMTVQERMMPAKVLKPEIASMNVGSMNFGL
YPMLKRYKEFKHDWEHSYLESSKDLIFRNTFGDLQTVLTELSPNGTRYEFECYDTSHLYN
LAHLVELGLVKAPYFIQTVFGILGGIGTHPDDVMHMKRTADRLFGSDYRWSVLGAGASQM
KIAGMAASMGANVRVGLEDNLWIGKGKLAQSNAEQVLKVREILDGLGLEVASPSEAREIL
QLKGASQVAF