PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24545 FitnessBrowser__Cup4G11:RR42_RS24545 (546 amino acids)

SeqID: RR42_RS24545 FitnessBrowser__Cup4G11:RR42_RS24545
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81171069: Proline/betaine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24545 FitnessBrowser__Cup4G11:RR42_RS24545
MAHGPDATSPMSRAIWAASIGTIFEWYEFALYGALASVLADKFFAGVDPSTAFIFALLTF
AVGFMMRPLGALVFGRIGDMIGRKRTFMITICMMGGATIGVGCLPTYASAGIVSPIALLC
LRILQGFSAGGEYTGALTYVAEYSPGRRRGLNMSWTTASSTVGLLLSFLVILASRTIAGD
SFDDWGWRLPFLAASVMLLVSLLLRVRMDESPAFRKLRSANKLSKAPLRDALLDRANLGR
IVIAFALCAGMTSMYYMAALYPTFFLTKSLKVDPTTVNTVVLLATALCVPVFPLAGWACD
RFGRKPVLLVGFLTSALLAFPVFKGLVIYANHALAAAQAKAPISIEVDRAACSLMFNPLG
NRKFASSCDLVKQALANAGASYQIIDAAPGTTARIRIGDDVLDAYDAGGMSADQAKAQSS
QLSQALHAALEKYSYPGKSDPKAFNVTVVLLLLALFFASSILTVMTIGPALVEMFPTRIR
YTSMGVPYNLATGWVGGLLPTFVFAIAAQTGNSLCGLWYPVGWTILSLVALCFFRETRDI
DIAADA