PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24620 FitnessBrowser__Cup4G11:RR42_RS24620 (498 amino acids)

SeqID: RR42_RS24620 FitnessBrowser__Cup4G11:RR42_RS24620
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24620 FitnessBrowser__Cup4G11:RR42_RS24620
MDDIAKKHDEAPEAAALTRRGFLGMAASVTAVATAAVLPNVAGAVSAAGDERDVLEVAII
GAGLAGLTAARDLKRAGCESFVVLEARDRVGGRTLNHDLGNGYFSEAGGQWIGPGQTAVA
DLARELGVGSFLTYWEGKAVMLAGNARATIAIDGGFDTDPKLRRELEEMARSVPTAAPWT
SPRAAEFDAMSLADWLATKHLTPEDQIGWALAAQLTTGTAPEKLSMLHYLSLINSAECNY
RQLEAVKGGAQESRIAGGSQILSIKMAEALGDKVRLSTPVLRIENWQNGPVTLHTAKGVI
RARSLIVALSPSLCNQITFDPPLPEKRREMQRRWPAYAPMRKTAHVYKKAFWRDKGLNGM
VVQLKGPVQWAFDNSPEDVSFGVISAFANNGVLPSDPKAAEAELSRIYAQAFGDEALHPV
AYHEHDWGKADNWSLSCTSPIPPGFLTKYGDVLHPSIGRLIWAGTETAEIWITTMDGAIR
SGHKAALQALQAVAELKA