PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24640 FitnessBrowser__Cup4G11:RR42_RS24640 (498 amino acids)

SeqID: RR42_RS24640 FitnessBrowser__Cup4G11:RR42_RS24640
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24640 FitnessBrowser__Cup4G11:RR42_RS24640
MDDIPTKRDETPEAAALTRRGFLGMAASVTAAATVAVLPKVASAAIAASDERDVLEVVVI
GAGLAGLTAARDLKRAGCESFVVLEARDRVGGRTLNHDLGNGYFSESGGQWIGPGQTAVA
DLARELGVGTFPTYWQGKTMMLAGDAHAAVDTEGGFGTDPKIAHELEELAKSVPCGAPWK
SPRAAEFDAMSVGDWLVKKNIANADQIGWSTGLAITGGASPARLSLLHWLSMVNSAECNY
DRLEAVKGGAQQTRISGGSQILSIKMAQALGDKVRLSTPVLRVENWQNGPVAIHTANGVV
RARNVIVALAPMLCNQIAFDPPLPEKRHEMQRRWPAFAPGRKTTHVYKKAFWRDRGLNGW
IFQPGGPVLWAYDNSPEDVSFGVINAFVHISMLPADPKEAEAQLSQIYAQAFGDQALHPI
AFHQRDWLKADKWTLSCVSPMPPGFLTTYGEALHPSVGKLIWSGTETAEIWAGYMDGAVR
SGHKAALQALQAVAGREA