PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26120 FitnessBrowser__Cup4G11:RR42_RS26120 (540 amino acids)

SeqID: RR42_RS26120 FitnessBrowser__Cup4G11:RR42_RS26120
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26120 FitnessBrowser__Cup4G11:RR42_RS26120
MNQAIEIKVPDIGDFRDVPVIELFVKVGDLVKAEDPLVSLESDKATMEVPAPHGGVVKQI
HVKLGDAVSEGSVLMQFEGAGAGTAAAEPAQATKPSVSAPPSPVSAPAGLAEVRIPDIGD
FKDIPVIEIFVKVGDTVRAEDALLSLESDKATMDVPAPLGGVVREIRVKVGDTVSEGSII
MALATGDAPAVAATAAPGAAPAVAAALAAPAAPAATAAATAAAASGGVDEAAFALAYASP
AVRKLARETGVDLGKVRGSGEHGRILRADVEAFARTGGPAAPAARPAAAPAGGGAGLDLL
AWPKVDFAKFGPVERKELSRIKKISGANLHRNWVVIPHVTTHDEADITDLELFRVQMNKE
LEKSGVKISMLPFMMKAAVATLKAFPEFNASLDGDTLVLKQYYHIGFAADTPNGLMVPVI
RDVDKKSIPDIAREMGELAKLAREGKLKPDQMSGGTFTISSLGGIGGINFTPIINAPEVA
IMGVCKSFWKQHSSDGKNWASRLTLPLSLSWDHRVIDGAAAARFNVHFANLLADLRRVLF